J3_9RPV_037

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9RPV|1|M5|A|1805, 9RPV|1|M5|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|U|1726
9RPV|1|M5|U|1727
*
9RPV|1|M5|A|1802
9RPV|1|M5|G|1803
9RPV|1|M5|A|1804
9RPV|1|M5|A|1805
9RPV|1|M5|G|1806
*
9RPV|1|M5|C|1832
9RPV|1|M5|G|1833
9RPV|1|M5|U|1834
9RPV|1|M5|G|1835
9RPV|1|M5|G|1836
9RPV|1|M5|A|1837

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MF

Large ribosomal subunit protein uL30

Chain MT

60S ribosomal protein L21

Chain Mb

Large ribosomal subunit protein eL29