J3_9RPV_040

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|U|2440
9RPV|1|M5|C|2441
9RPV|1|M5|G|2442
9RPV|1|M5|G|2443
9RPV|1|M5|U|2444
9RPV|1|M5|C|2445
*
9RPV|1|M5|G|2515
9RPV|1|M5|G|2516
9RPV|1|M5|A|2517
9RPV|1|M5|G|2518
9RPV|1|M5|U|2519
*
9RPV|1|M5|A|2536
9RPV|1|M5|A|2537

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain M8

5.8S ribosomal RNA; 5.8S rRNA

Chain MX

60S ribosomal protein L23a

Chain Mg

60S ribosomal protein L34

Chain Mk

60S ribosomal protein L38

Chain Ml

60S ribosomal protein L39