J3_9RPV_041
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 9RPV|1|M5|C|2470, 9RPV|1|M5|A|2472, 9RPV|1|M5|G|2475, 9RPV|1|M5|G|2503, 9RPV|1|M5|C|2504
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RPV|1|M5|A|2451
9RPV|1|M5|G|2452
9RPV|1|M5|A|2453
9RPV|1|M5|U|2454
9RPV|1|M5|G|2455
9RPV|1|M5|G|2456
*
9RPV|1|M5|C|2465
9RPV|1|M5|G|2466
9RPV|1|M5|U|2467
9RPV|1|M5|U|2468
9RPV|1|M5|C|2469
9RPV|1|M5|C|2470
9RPV|1|M5|G|2471
9RPV|1|M5|A|2472
9RPV|1|M5|A|2473
9RPV|1|M5|G|2474
9RPV|1|M5|G|2475
9RPV|1|M5|G|2476
*
9RPV|1|M5|C|2501
9RPV|1|M5|G|2502
9RPV|1|M5|G|2503
9RPV|1|M5|C|2504
9RPV|1|M5|C|2505
9RPV|1|M5|G|2506
9RPV|1|M5|A|2507
9RPV|1|M5|PSU|2508
Current chains
- Chain M5
- 28S rRNA of the stalled 80S
Nearby chains
- Chain M8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain MA
- Large ribosomal subunit protein uL2
- Chain MG
- 60S ribosomal protein L7a
- Chain MN
- 60S ribosomal protein L15
- Chain MX
- 60S ribosomal protein L23a
- Chain Mj
- Large ribosomal subunit protein eL37
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