J3_9RPV_049

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UAUC*GU(PSU)*ACUAAUA

Length

14 nucleotides

Bulged bases

9RPV|1|M5|A|4464, 9RPV|1|M5|U|4465

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RPV_049 not in the Motif Atlas

Geometric match to J3_9PN5_022

Geometric discrepancy: 0.0929

The information below is about J3_9PN5_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.4

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

6

Unit IDs

9RPV|1|M5|U|4463
9RPV|1|M5|A|4464
9RPV|1|M5|U|4465
9RPV|1|M5|C|4466
*
9RPV|1|M5|G|4491
9RPV|1|M5|U|4492
9RPV|1|M5|PSU|4493
*
9RPV|1|M5|A|4507
9RPV|1|M5|C|4508
9RPV|1|M5|U|4509
9RPV|1|M5|A|4510
9RPV|1|M5|A|4511
9RPV|1|M5|U|4512
9RPV|1|M5|A|4513

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MB

Large ribosomal subunit protein uL3

Chain MO

60S ribosomal protein L13a

Chain MV

60S ribosomal protein L23