J3_9RPV_053

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CA(PSU)UCG*CCUGCUUCU*AAGG

Length

19 nucleotides

Bulged bases

9RPV|1|M5|U|4989

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|4970
9RPV|1|M5|A|4971
9RPV|1|M5|PSU|4972
9RPV|1|M5|U|4973
9RPV|1|M5|C|4974
9RPV|1|M5|G|4975
*
9RPV|1|M5|C|4983
9RPV|1|M5|C|4984
9RPV|1|M5|U|4985
9RPV|1|M5|G|4986
9RPV|1|M5|C|4987
9RPV|1|M5|U|4988
9RPV|1|M5|U|4989
9RPV|1|M5|C|4990
9RPV|1|M5|U|4991
*
9RPV|1|M5|A|5060
9RPV|1|M5|A|5061
9RPV|1|M5|G|5062
9RPV|1|M5|G|5063

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MB

Large ribosomal subunit protein uL3

Chain MP

60S ribosomal protein L17

Chain Md

60S ribosomal protein L31