J3_9RTU_001

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RTU_001 not in the Motif Atlas

Geometric match to J3_8GLP_025

Geometric discrepancy: 0.0857

The information below is about J3_8GLP_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

9RTU|1|A|G|30
9RTU|1|A|C|31
*
9RTU|1|A|G|474
9RTU|1|A|C|475
9RTU|1|A|G|476
9RTU|1|A|A|477
9RTU|1|A|A|478
9RTU|1|A|A|479
9RTU|1|A|A|480
9RTU|1|A|G|481
*
9RTU|1|A|C|509
9RTU|1|A|C|510

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain U

50S ribosomal protein L24