J3_9RTU_006

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9RTU|1|A|U|686, 9RTU|1|A|A|792, 9RTU|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9RTU_006 not in the Motif Atlas

Geometric match to J3_7A0S_004

Geometric discrepancy: 0.0981

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

9RTU|1|A|U|683
9RTU|1|A|G|684
9RTU|1|A|A|685
9RTU|1|A|U|686
9RTU|1|A|C|687
9RTU|1|A|U|688
9RTU|1|A|A|689
*
9RTU|1|A|U|773
9RTU|1|A|G|774
9RTU|1|A|G|775
*
9RTU|1|A|C|791
9RTU|1|A|A|792
9RTU|1|A|A|793
9RTU|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain C

50S ribosomal protein L2