J3_9RTU_028
3D structure
- PDB id
- 9RTU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9RTU|1|a|A|975, 9RTU|1|a|G|976, 9RTU|1|a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9RTU_028 not in the Motif Atlas
- Geometric match to J3_4LFB_004
- Geometric discrepancy: 0.1041
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9RTU|1|a|U|955
9RTU|1|a|U|956
9RTU|1|a|U|957
9RTU|1|a|A|958
9RTU|1|a|A|959
9RTU|1|a|U|960
9RTU|1|a|U|961
9RTU|1|a|C|962
*
9RTU|1|a|G|973
9RTU|1|a|A|974
9RTU|1|a|A|975
9RTU|1|a|G|976
9RTU|1|a|A|977
9RTU|1|a|A|978
9RTU|1|a|C|979
9RTU|1|a|C|980
9RTU|1|a|U|981
9RTU|1|a|U|982
9RTU|1|a|A|983
9RTU|1|a|C|984
*
9RTU|1|a|G|1221
9RTU|1|a|G|1222
9RTU|1|a|C|1223
9RTU|1|a|U|1224
9RTU|1|a|A|1225
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
- Chain w
- Transfer RNA; tRNA
Coloring options: