J3_9RU8_002

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9RU8|1|L5|C|216, 9RU8|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU8|1|L5|C|196
9RU8|1|L5|A|197
9RU8|1|L5|A|198
9RU8|1|L5|G|199
*
9RU8|1|L5|C|215
9RU8|1|L5|C|216
9RU8|1|L5|C|217
9RU8|1|L5|A|218
9RU8|1|L5|G|219
9RU8|1|L5|C|220
9RU8|1|L5|C|221
9RU8|1|L5|C|222
9RU8|1|L5|G|223
9RU8|1|L5|U|224
9RU8|1|L5|G|225
9RU8|1|L5|G|226
9RU8|1|L5|A|227
9RU8|1|L5|C|228
*
9RU8|1|L5|G|240
9RU8|1|L5|G|241
9RU8|1|L5|U|242
9RU8|1|L5|A|243
9RU8|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

Large ribosomal subunit protein uL24