J3_9RU8_007

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9RU8|1|L5|G|959, 9RU8|1|L5|G|965, 9RU8|1|L5|C|967, 9RU8|1|L5|U|971, 9RU8|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU8|1|L5|C|712
9RU8|1|L5|C|713
*
9RU8|1|L5|G|955
9RU8|1|L5|A|956
9RU8|1|L5|G|957
9RU8|1|L5|G|958
9RU8|1|L5|G|959
9RU8|1|L5|A|960
9RU8|1|L5|G|961
9RU8|1|L5|C|962
9RU8|1|L5|G|963
9RU8|1|L5|A|964
9RU8|1|L5|G|965
9RU8|1|L5|A|966
9RU8|1|L5|C|967
9RU8|1|L5|C|968
9RU8|1|L5|C|969
9RU8|1|L5|G|970
9RU8|1|L5|U|971
9RU8|1|L5|C|972
9RU8|1|L5|G|973
9RU8|1|L5|C|974
9RU8|1|L5|C|975
9RU8|1|L5|G|976
*
9RU8|1|L5|C|1278
9RU8|1|L5|A|1279
9RU8|1|L5|C|1280
9RU8|1|L5|G|1281
9RU8|1|L5|G|1282
9RU8|1|L5|G|1283
9RU8|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Le

60S ribosomal protein L32