J3_9RU8_034
3D structure
- PDB id
- 9RU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- C(PSU)(PSU)AAU(PSU)(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9RU8|1|S2|G|1256, 9RU8|1|S2|A|1258, 9RU8|1|S2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RU8|1|S2|C|1237
9RU8|1|S2|PSU|1238
9RU8|1|S2|PSU|1239
9RU8|1|S2|A|1240
9RU8|1|S2|A|1241
9RU8|1|S2|U|1242
9RU8|1|S2|PSU|1243
9RU8|1|S2|PSU|1244
*
9RU8|1|S2|G|1255
9RU8|1|S2|G|1256
9RU8|1|S2|G|1257
9RU8|1|S2|A|1258
9RU8|1|S2|A|1259
9RU8|1|S2|A|1260
9RU8|1|S2|C|1261
9RU8|1|S2|C|1262
9RU8|1|S2|U|1263
9RU8|1|S2|C|1264
9RU8|1|S2|A|1265
9RU8|1|S2|C|1266
*
9RU8|1|S2|G|1516
9RU8|1|S2|G|1517
9RU8|1|S2|C|1518
9RU8|1|S2|U|1519
9RU8|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- Small ribosomal subunit protein uS13
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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