J3_9RU8_035

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9RU8|1|S2|G|1274, 9RU8|1|S2|G|1507, 9RU8|1|S2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU8|1|S2|C|1272
9RU8|1|S2|C|1273
9RU8|1|S2|G|1274
9RU8|1|S2|G|1275
9RU8|1|S2|A|1276
9RU8|1|S2|C|1277
*
9RU8|1|S2|G|1320
9RU8|1|S2|G|1321
9RU8|1|S2|G|1322
9RU8|1|S2|U|1323
9RU8|1|S2|G|1324
*
9RU8|1|S2|U|1504
9RU8|1|S2|U|1505
9RU8|1|S2|A|1506
9RU8|1|S2|G|1507
9RU8|1|S2|A|1508
9RU8|1|S2|U|1509
9RU8|1|S2|G|1510

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

Small ribosomal subunit protein eS10

Chain Sd

40S ribosomal protein S29