J3_9RU9_019

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9RU9|1|L5|C|4337, 9RU9|1|L5|U|4374

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|OMG|4228
9RU9|1|L5|U|4229
9RU9|1|L5|C|4230
*
9RU9|1|L5|G|4331
9RU9|1|L5|C|4332
9RU9|1|L5|C|4333
9RU9|1|L5|U|4334
9RU9|1|L5|C|4335
9RU9|1|L5|A|4336
9RU9|1|L5|C|4337
9RU9|1|L5|G|4338
9RU9|1|L5|A|4339
9RU9|1|L5|U|4340
9RU9|1|L5|C|4341
9RU9|1|L5|C|4342
*
9RU9|1|L5|OMG|4370
9RU9|1|L5|G|4371
9RU9|1|L5|U|4372
9RU9|1|L5|G|4373
9RU9|1|L5|U|4374
9RU9|1|L5|C|4375

Current chains

Chain L5

23S rRNA

Nearby chains

Chain Et

Transfer RNA; tRNA

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

Large ribosomal subunit protein uL15

Chain Lo

Large ribosomal subunit protein eL42