J3_9RUA_007

3D structure

PDB id

9RUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9RUA|1|L5|C|962, 9RUA|1|L5|G|965, 9RUA|1|L5|C|967, 9RUA|1|L5|C|968, 9RUA|1|L5|C|969, 9RUA|1|L5|U|971, 9RUA|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUA|1|L5|C|712
9RUA|1|L5|C|713
*
9RUA|1|L5|G|955
9RUA|1|L5|A|956
9RUA|1|L5|G|957
9RUA|1|L5|G|958
9RUA|1|L5|G|959
9RUA|1|L5|A|960
9RUA|1|L5|G|961
9RUA|1|L5|C|962
9RUA|1|L5|G|963
9RUA|1|L5|A|964
9RUA|1|L5|G|965
9RUA|1|L5|A|966
9RUA|1|L5|C|967
9RUA|1|L5|C|968
9RUA|1|L5|C|969
9RUA|1|L5|G|970
9RUA|1|L5|U|971
9RUA|1|L5|C|972
9RUA|1|L5|G|973
9RUA|1|L5|C|974
9RUA|1|L5|C|975
9RUA|1|L5|G|976
*
9RUA|1|L5|C|1278
9RUA|1|L5|A|1279
9RUA|1|L5|C|1280
9RUA|1|L5|G|1281
9RUA|1|L5|G|1282
9RUA|1|L5|G|1283
9RUA|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Le

Large ribosomal subunit protein eL32