J3_9RUA_018

3D structure

PDB id

9RUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9RUA|1|L5|C|4337, 9RUA|1|L5|U|4374

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUA|1|L5|OMG|4228
9RUA|1|L5|U|4229
9RUA|1|L5|C|4230
*
9RUA|1|L5|G|4331
9RUA|1|L5|C|4332
9RUA|1|L5|C|4333
9RUA|1|L5|U|4334
9RUA|1|L5|C|4335
9RUA|1|L5|A|4336
9RUA|1|L5|C|4337
9RUA|1|L5|G|4338
9RUA|1|L5|A|4339
9RUA|1|L5|U|4340
9RUA|1|L5|C|4341
9RUA|1|L5|C|4342
*
9RUA|1|L5|OMG|4370
9RUA|1|L5|G|4371
9RUA|1|L5|U|4372
9RUA|1|L5|G|4373
9RUA|1|L5|U|4374
9RUA|1|L5|C|4375

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

Large ribosomal subunit protein uL15

Chain Lo

Large ribosomal subunit protein eL42

Chain S6

Transfer RNA; tRNA