J3_9RUC_005

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGA(A2M)C(PSU)A*UAG*CGAA

Length

14 nucleotides

Bulged bases

9RUC|1|L5|A2M|1534, 9RUC|1|L5|G|1641, 9RUC|1|L5|A|1642

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|L5|U|1531
9RUC|1|L5|G|1532
9RUC|1|L5|A|1533
9RUC|1|L5|A2M|1534
9RUC|1|L5|C|1535
9RUC|1|L5|PSU|1536
9RUC|1|L5|A|1537
*
9RUC|1|L5|U|1622
9RUC|1|L5|A|1623
9RUC|1|L5|G|1624
*
9RUC|1|L5|C|1640
9RUC|1|L5|G|1641
9RUC|1|L5|A|1642
9RUC|1|L5|A|1643

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LN

60S ribosomal protein L15

Chain Lj

Large ribosomal subunit protein eL37