J3_9RUC_014

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9RUC|1|L5|C|4337, 9RUC|1|L5|U|4374

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|L5|OMG|4228
9RUC|1|L5|U|4229
9RUC|1|L5|C|4230
*
9RUC|1|L5|G|4331
9RUC|1|L5|C|4332
9RUC|1|L5|C|4333
9RUC|1|L5|U|4334
9RUC|1|L5|C|4335
9RUC|1|L5|A|4336
9RUC|1|L5|C|4337
9RUC|1|L5|G|4338
9RUC|1|L5|A|4339
9RUC|1|L5|U|4340
9RUC|1|L5|C|4341
9RUC|1|L5|C|4342
*
9RUC|1|L5|OMG|4370
9RUC|1|L5|G|4371
9RUC|1|L5|U|4372
9RUC|1|L5|G|4373
9RUC|1|L5|U|4374
9RUC|1|L5|C|4375

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

Large ribosomal subunit protein uL15

Chain Lo

Large ribosomal subunit protein eL42

Chain S6

Transfer RNA; tRNA