J3_9RUC_026

3D structure

PDB id

9RUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

9RUC|1|S2|C|1138, 9RUC|1|S2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUC|1|S2|C|1094
9RUC|1|S2|U|1095
9RUC|1|S2|G|1096
*
9RUC|1|S2|U|1136
9RUC|1|S2|U|1137
9RUC|1|S2|C|1138
9RUC|1|S2|C|1139
9RUC|1|S2|G|1140
*
9RUC|1|S2|C|1147
9RUC|1|S2|A|1148
9RUC|1|S2|A|1149
9RUC|1|S2|A|1150
9RUC|1|S2|G|1151

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SV

Small ribosomal subunit protein eS21

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26

Chain Sb

40S ribosomal protein S27