J3_9S3C_007

3D structure

PDB id

9S3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9S3C|1|L5|G|959, 9S3C|1|L5|C|962, 9S3C|1|L5|G|965, 9S3C|1|L5|C|967, 9S3C|1|L5|C|968, 9S3C|1|L5|C|969, 9S3C|1|L5|U|971, 9S3C|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9S3C|1|L5|C|712
9S3C|1|L5|C|713
*
9S3C|1|L5|G|955
9S3C|1|L5|A|956
9S3C|1|L5|G|957
9S3C|1|L5|G|958
9S3C|1|L5|G|959
9S3C|1|L5|A|960
9S3C|1|L5|G|961
9S3C|1|L5|C|962
9S3C|1|L5|G|963
9S3C|1|L5|A|964
9S3C|1|L5|G|965
9S3C|1|L5|A|966
9S3C|1|L5|C|967
9S3C|1|L5|C|968
9S3C|1|L5|C|969
9S3C|1|L5|G|970
9S3C|1|L5|U|971
9S3C|1|L5|C|972
9S3C|1|L5|G|973
9S3C|1|L5|C|974
9S3C|1|L5|C|975
9S3C|1|L5|G|976
*
9S3C|1|L5|C|1278
9S3C|1|L5|A|1279
9S3C|1|L5|C|1280
9S3C|1|L5|G|1281
9S3C|1|L5|G|1282
9S3C|1|L5|G|1283
9S3C|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Le

60S ribosomal protein L32