3D structure

PDB id
9S3C (explore in PDB, NAKB, or RNA 3D Hub)
Description
NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 2
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
CUGGC*GGACAAG*CCCGAGAUUG
Length
22 nucleotides
Bulged bases
9S3C|1|S2|U|1477
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9S3C|1|S2|C|1391
9S3C|1|S2|U|1392
9S3C|1|S2|G|1393
9S3C|1|S2|G|1394
9S3C|1|S2|C|1395
*
9S3C|1|S2|G|1450
9S3C|1|S2|G|1451
9S3C|1|S2|A|1452
9S3C|1|S2|C|1453
9S3C|1|S2|A|1454
9S3C|1|S2|A|1455
9S3C|1|S2|G|1456
*
9S3C|1|S2|C|1470
9S3C|1|S2|C|1471
9S3C|1|S2|C|1472
9S3C|1|S2|G|1473
9S3C|1|S2|A|1474
9S3C|1|S2|G|1475
9S3C|1|S2|A|1476
9S3C|1|S2|U|1477
9S3C|1|S2|U|1478
9S3C|1|S2|G|1479

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SD
40S ribosomal protein S3
Chain SF
40S ribosomal protein S5
Chain SQ
40S ribosomal protein S16
Chain SR
40S ribosomal protein S17
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29
Chain Sg
Receptor of activated protein C kinase 1

Coloring options:

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