J3_9S3D_007

3D structure

PDB id

9S3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC bound human RNC with 58 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9S3D|1|L5|G|959, 9S3D|1|L5|C|962, 9S3D|1|L5|G|965, 9S3D|1|L5|C|967, 9S3D|1|L5|C|968, 9S3D|1|L5|C|969, 9S3D|1|L5|U|971, 9S3D|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9S3D|1|L5|C|712
9S3D|1|L5|C|713
*
9S3D|1|L5|G|955
9S3D|1|L5|A|956
9S3D|1|L5|G|957
9S3D|1|L5|G|958
9S3D|1|L5|G|959
9S3D|1|L5|A|960
9S3D|1|L5|G|961
9S3D|1|L5|C|962
9S3D|1|L5|G|963
9S3D|1|L5|A|964
9S3D|1|L5|G|965
9S3D|1|L5|A|966
9S3D|1|L5|C|967
9S3D|1|L5|C|968
9S3D|1|L5|C|969
9S3D|1|L5|G|970
9S3D|1|L5|U|971
9S3D|1|L5|C|972
9S3D|1|L5|G|973
9S3D|1|L5|C|974
9S3D|1|L5|C|975
9S3D|1|L5|G|976
*
9S3D|1|L5|C|1278
9S3D|1|L5|A|1279
9S3D|1|L5|C|1280
9S3D|1|L5|G|1281
9S3D|1|L5|G|1282
9S3D|1|L5|G|1283
9S3D|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Le

60S ribosomal protein L32