J3_9S7D_004

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9S7D_004 not in the Motif Atlas

Homologous match to J3_8B0X_017

Geometric discrepancy: 0.1502

The information below is about J3_8B0X_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.3

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

11

Unit IDs

9S7D|1|A|C|1930
9S7D|1|A|A|1931
9S7D|1|A|G|1932
*
9S7D|1|A|C|1942
9S7D|1|A|A|1943
9S7D|1|A|C|1944
9S7D|1|A|A|1945
9S7D|1|A|C|1946
*
9S7D|1|A|G|1970
9S7D|1|A|A|1971
9S7D|1|A|A|1972
9S7D|1|A|G|1973

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein mL37

Chain D

Large ribosomal subunit protein uL2m