J3_9SLG_022
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9SLG|1|a|U|688, 9SLG|1|a|A|794, 9SLG|1|a|A|795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SLG_022 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.1649
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SLG|1|a|U|685
9SLG|1|a|G|686
9SLG|1|a|A|687
9SLG|1|a|U|688
9SLG|1|a|C|689
9SLG|1|a|U|690
9SLG|1|a|A|691
*
9SLG|1|a|U|775
9SLG|1|a|G|776
9SLG|1|a|G|777
*
9SLG|1|a|C|793
9SLG|1|a|A|794
9SLG|1|a|A|795
9SLG|1|a|A|796
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain c
- Large ribosomal subunit protein uL2
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