J3_9SLG_032

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

9SLG|1|a|U|2338, 9SLG|1|a|A|2340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SLG|1|a|C|2299
9SLG|1|a|U|2300
9SLG|1|a|A|2301
9SLG|1|a|A|2302
9SLG|1|a|U|2303
*
9SLG|1|a|A|2321
9SLG|1|a|G|2322
9SLG|1|a|G|2323
9SLG|1|a|U|2324
9SLG|1|a|U|2325
9SLG|1|a|A|2326
9SLG|1|a|G|2327
*
9SLG|1|a|C|2336
9SLG|1|a|A|2337
9SLG|1|a|U|2338
9SLG|1|a|A|2339
9SLG|1|a|A|2340
9SLG|1|a|G|2341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

Large ribosomal subunit protein uL5

Chain n

Large ribosomal subunit protein uL18

Chain v

Large ribosomal subunit protein bL27