J3_9SLG_035

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9SLG|1|a|U|2837, 9SLG|1|a|A|2839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SLG|1|a|G|2816
9SLG|1|a|A|2817
9SLG|1|a|A|2818
9SLG|1|a|C|2819
*
9SLG|1|a|G|2835
9SLG|1|a|U|2836
9SLG|1|a|U|2837
9SLG|1|a|G|2838
9SLG|1|a|A|2839
9SLG|1|a|U|2840
*
9SLG|1|a|A|2886
9SLG|1|a|A|2887
9SLG|1|a|U|2888
9SLG|1|a|G|2889
9SLG|1|a|A|2890
9SLG|1|a|A|2891
9SLG|1|a|C|2892

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32