J3_9SPF_006

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

9SPF|1|L5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|C|451
9SPF|1|L5|A|452
9SPF|1|L5|G|453
9SPF|1|L5|U|454
9SPF|1|L5|C|455
*
9SPF|1|L5|G|701
9SPF|1|L5|U|702
9SPF|1|L5|G|703
9SPF|1|L5|C|704
9SPF|1|L5|G|705
*
9SPF|1|L5|C|1292
9SPF|1|L5|G|1293
9SPF|1|L5|A|1294
9SPF|1|L5|C|1295
9SPF|1|L5|G|1296

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a