J3_9SPF_022

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAUC*GU(PSU)*ACUAAUA

Length

14 nucleotides

Bulged bases

9SPF|1|L5|A|4464, 9SPF|1|L5|U|4465

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|U|4463
9SPF|1|L5|A|4464
9SPF|1|L5|U|4465
9SPF|1|L5|C|4466
*
9SPF|1|L5|G|4491
9SPF|1|L5|U|4492
9SPF|1|L5|PSU|4493
*
9SPF|1|L5|A|4507
9SPF|1|L5|C|4508
9SPF|1|L5|U|4509
9SPF|1|L5|A|4510
9SPF|1|L5|A|4511
9SPF|1|L5|U|4512
9SPF|1|L5|A|4513

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23