J3_9SPF_036

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9SPF|1|S2|G|1274, 9SPF|1|S2|G|1507, 9SPF|1|S2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|S2|C|1272
9SPF|1|S2|C|1273
9SPF|1|S2|G|1274
9SPF|1|S2|G|1275
9SPF|1|S2|A|1276
9SPF|1|S2|C|1277
*
9SPF|1|S2|G|1320
9SPF|1|S2|G|1321
9SPF|1|S2|G|1322
9SPF|1|S2|U|1323
9SPF|1|S2|G|1324
*
9SPF|1|S2|U|1504
9SPF|1|S2|U|1505
9SPF|1|S2|A|1506
9SPF|1|S2|G|1507
9SPF|1|S2|A|1508
9SPF|1|S2|U|1509
9SPF|1|S2|G|1510

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin