J3_9SPI_007
3D structure
- PDB id
- 9SPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9SPI|1|L5|A2M|1534, 9SPI|1|L5|G|1641, 9SPI|1|L5|A|1642
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPI|1|L5|U|1531
9SPI|1|L5|G|1532
9SPI|1|L5|A|1533
9SPI|1|L5|A2M|1534
9SPI|1|L5|C|1535
9SPI|1|L5|PSU|1536
9SPI|1|L5|A|1537
*
9SPI|1|L5|U|1622
9SPI|1|L5|A|1623
9SPI|1|L5|G|1624
*
9SPI|1|L5|C|1640
9SPI|1|L5|G|1641
9SPI|1|L5|A|1642
9SPI|1|L5|A|1643
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LN
- 60S ribosomal protein L15
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Ll
- 60S ribosomal protein L39
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