J3_9SPI_016
3D structure
- PDB id
- 9SPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 9SPI|1|L5|U|4117, 9SPI|1|L5|U|4118, 9SPI|1|L5|C|4119, 9SPI|1|L5|U|4120, 9SPI|1|L5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPI|1|L5|G|4091
9SPI|1|L5|G|4092
9SPI|1|L5|G|4093
9SPI|1|L5|G|4094
*
9SPI|1|L5|C|4114
9SPI|1|L5|G|4115
9SPI|1|L5|C|4116
9SPI|1|L5|U|4117
9SPI|1|L5|U|4118
9SPI|1|L5|C|4119
9SPI|1|L5|U|4120
9SPI|1|L5|G|4121
9SPI|1|L5|G|4122
9SPI|1|L5|C|4123
9SPI|1|L5|G|4124
9SPI|1|L5|C|4125
9SPI|1|L5|C|4126
9SPI|1|L5|A|4127
9SPI|1|L5|A|4128
9SPI|1|L5|G|4129
*
9SPI|1|L5|C|4155
9SPI|1|L5|G|4156
9SPI|1|L5|A|4157
9SPI|1|L5|C|4158
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
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