J3_9SPI_019
3D structure
- PDB id
- 9SPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAUC*GU(PSU)*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9SPI|1|L5|A|4464, 9SPI|1|L5|U|4465
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SPI|1|L5|U|4463
9SPI|1|L5|A|4464
9SPI|1|L5|U|4465
9SPI|1|L5|C|4466
*
9SPI|1|L5|G|4491
9SPI|1|L5|U|4492
9SPI|1|L5|PSU|4493
*
9SPI|1|L5|A|4507
9SPI|1|L5|C|4508
9SPI|1|L5|U|4509
9SPI|1|L5|A|4510
9SPI|1|L5|A|4511
9SPI|1|L5|U|4512
9SPI|1|L5|A|4513
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LO
- 60S ribosomal protein L13a
- Chain LV
- 60S ribosomal protein L23
Coloring options: