J3_9SPI_032
3D structure
- PDB id
- 9SPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- C(PSU)(PSU)AAU(PSU)(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9SPI|1|S2|G|1256, 9SPI|1|S2|A|1258, 9SPI|1|S2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SPI_032 not in the Motif Atlas
- Homologous match to J3_9PN5_037
- Geometric discrepancy: 0.054
- The information below is about J3_9PN5_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9SPI|1|S2|C|1237
9SPI|1|S2|PSU|1238
9SPI|1|S2|PSU|1239
9SPI|1|S2|A|1240
9SPI|1|S2|A|1241
9SPI|1|S2|U|1242
9SPI|1|S2|PSU|1243
9SPI|1|S2|PSU|1244
*
9SPI|1|S2|G|1255
9SPI|1|S2|G|1256
9SPI|1|S2|G|1257
9SPI|1|S2|A|1258
9SPI|1|S2|A|1259
9SPI|1|S2|A|1260
9SPI|1|S2|C|1261
9SPI|1|S2|C|1262
9SPI|1|S2|U|1263
9SPI|1|S2|C|1264
9SPI|1|S2|A|1265
9SPI|1|S2|C|1266
*
9SPI|1|S2|G|1516
9SPI|1|S2|G|1517
9SPI|1|S2|C|1518
9SPI|1|S2|U|1519
9SPI|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain At
- Transfer RNA; tRNA
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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