J3_9SRA_008
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAUCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 9SRA|1|1|U|935, 9SRA|1|1|G|1043, 9SRA|1|1|A|1044
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRA_008 not in the Motif Atlas
- Homologous match to J3_4V9F_002
- Geometric discrepancy: 0.1051
- The information below is about J3_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.3
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SRA|1|1|C|932
9SRA|1|1|G|933
9SRA|1|1|A|934
9SRA|1|1|U|935
9SRA|1|1|C|936
9SRA|1|1|U|937
9SRA|1|1|A|938
*
9SRA|1|1|U|1024
9SRA|1|1|A|1025
9SRA|1|1|G|1026
*
9SRA|1|1|C|1042
9SRA|1|1|G|1043
9SRA|1|1|A|1044
9SRA|1|1|G|1045
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BM
- Large ribosomal subunit protein eL15
- Chain Be
- Large ribosomal subunit protein eL37
Coloring options: