J3_9SRA_009
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAG*(4AC)GCUAG*CGUG
- Length
- 13 nucleotides
- Bulged bases
- 9SRA|1|1|C|983
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRA_009 not in the Motif Atlas
- Homologous match to J3_4V9F_003
- Geometric discrepancy: 0.133
- The information below is about J3_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69816.3
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9SRA|1|1|C|947
9SRA|1|1|A|948
9SRA|1|1|G|949
*
9SRA|1|1|4AC|981
9SRA|1|1|G|982
9SRA|1|1|C|983
9SRA|1|1|U|984
9SRA|1|1|A|985
9SRA|1|1|G|986
*
9SRA|1|1|C|1011
9SRA|1|1|G|1012
9SRA|1|1|U|1013
9SRA|1|1|G|1014
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain Bd
- Large ribosomal subunit protein eL34
- Chain Bi
- Large ribosomal subunit protein eL43
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