J3_9SRA_015
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGACG*CC*GAAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRA_015 not in the Motif Atlas
- Homologous match to J3_4V9F_017
- Geometric discrepancy: 0.0848
- The information below is about J3_4V9F_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.3
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9SRA|1|1|U|1702
9SRA|1|1|G|1703
9SRA|1|1|A|1704
9SRA|1|1|C|1705
9SRA|1|1|G|1706
*
9SRA|1|1|C|1834
9SRA|1|1|C|1835
*
9SRA|1|1|G|1839
9SRA|1|1|A|1840
9SRA|1|1|A|1841
9SRA|1|1|A|1842
9SRA|1|1|A|1843
9SRA|1|1|G|1844
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain Bd
- Large ribosomal subunit protein eL34
- Chain Bi
- Large ribosomal subunit protein eL43
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