J3_9SRA_017
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCC*GCCUAGCGAACC*GAUGAC
- Length
- 21 nucleotides
- Bulged bases
- 9SRA|1|1|A|2622, 9SRA|1|1|C|2624, 9SRA|1|1|A|2660
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRA_017 not in the Motif Atlas
- Geometric match to J3_8GLP_034
- Geometric discrepancy: 0.1541
- The information below is about J3_8GLP_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9SRA|1|1|G|2513
9SRA|1|1|C|2514
9SRA|1|1|C|2515
*
9SRA|1|1|G|2618
9SRA|1|1|C|2619
9SRA|1|1|C|2620
9SRA|1|1|U|2621
9SRA|1|1|A|2622
9SRA|1|1|G|2623
9SRA|1|1|C|2624
9SRA|1|1|G|2625
9SRA|1|1|A|2626
9SRA|1|1|A|2627
9SRA|1|1|C|2628
9SRA|1|1|C|2629
*
9SRA|1|1|G|2656
9SRA|1|1|A|2657
9SRA|1|1|U|2658
9SRA|1|1|G|2659
9SRA|1|1|A|2660
9SRA|1|1|C|2661
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BL
- Large ribosomal subunit protein uL15
- Chain BR
- Large ribosomal subunit protein eL21
- Chain Bj
- Large ribosomal subunit protein eL42
- Chain H
- Dehydrogenase
Coloring options: