J3_9SRA_018
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9SRA|1|1|A|2565, 9SRA|1|1|A|2567
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRA_018 not in the Motif Atlas
- Homologous match to J3_4V9F_008
- Geometric discrepancy: 0.1363
- The information below is about J3_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.3
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SRA|1|1|C|2526
9SRA|1|1|U|2527
9SRA|1|1|C|2528
*
9SRA|1|1|G|2552
9SRA|1|1|A|2553
9SRA|1|1|G|2554
*
9SRA|1|1|C|2563
9SRA|1|1|A|2564
9SRA|1|1|A|2565
9SRA|1|1|A|2566
9SRA|1|1|A|2567
9SRA|1|1|G|2568
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain BE
- Large ribosomal subunit protein uL5
- Chain BO
- Large ribosomal subunit protein uL18
- Chain BR
- Large ribosomal subunit protein eL21
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