J3_9SRB_006

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUA*UGAGUAC*GGAAGC

Length

16 nucleotides

Bulged bases

9SRB|1|1|U|417, 9SRB|1|1|G|527

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRB|1|1|G|416
9SRB|1|1|U|417
9SRB|1|1|A|418
*
9SRB|1|1|U|526
9SRB|1|1|G|527
9SRB|1|1|A|528
9SRB|1|1|G|529
9SRB|1|1|U|530
9SRB|1|1|A|531
9SRB|1|1|C|532
*
9SRB|1|1|G|553
9SRB|1|1|G|554
9SRB|1|1|A|555
9SRB|1|1|A|556
9SRB|1|1|G|557
9SRB|1|1|C|558

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BM

Large ribosomal subunit protein eL15

Chain Bk

C2H2-type domain-containing protein