J3_9SRB_026

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAAG*CUAGUACC*GCGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRB|1|2|C|908
9SRB|1|2|A|909
9SRB|1|2|A|910
9SRB|1|2|G|911
*
9SRB|1|2|C|1318
9SRB|1|2|U|1319
9SRB|1|2|A|1320
9SRB|1|2|G|1321
9SRB|1|2|U|1322
9SRB|1|2|A|1323
9SRB|1|2|C|1324
9SRB|1|2|C|1325
*
9SRB|1|2|G|1345
9SRB|1|2|C|1346
9SRB|1|2|G|1347
9SRB|1|2|A|1348
9SRB|1|2|A|1349
9SRB|1|2|U|1350
9SRB|1|2|A|1351
9SRB|1|2|C|1352
9SRB|1|2|G|1353

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AH

30S ribosomal protein S7

Chain AK

30S ribosomal protein S9

Chain AU

30S ribosomal protein S19e

Chain AX

30S ribosomal protein S28e