J3_9SRB_028
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUUAAUU(OMG)*CGGGAACCUCAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9SRB|1|2|G|946, 9SRB|1|2|G|948, 9SRB|1|2|A|950
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRB|1|2|U|927
9SRB|1|2|U|928
9SRB|1|2|U|929
9SRB|1|2|A|930
9SRB|1|2|A|931
9SRB|1|2|U|932
9SRB|1|2|U|933
9SRB|1|2|OMG|934
*
9SRB|1|2|C|945
9SRB|1|2|G|946
9SRB|1|2|G|947
9SRB|1|2|G|948
9SRB|1|2|A|949
9SRB|1|2|A|950
9SRB|1|2|C|951
9SRB|1|2|C|952
9SRB|1|2|U|953
9SRB|1|2|C|954
9SRB|1|2|A|955
9SRB|1|2|C|956
*
9SRB|1|2|G|1195
9SRB|1|2|G|1196
9SRB|1|2|C|1197
9SRB|1|2|U|1198
9SRB|1|2|A|1199
Current chains
- Chain 2
- rRNA 16S
Nearby chains
- Chain AL
- 30S ribosomal protein S10
- Chain AO
- 30S ribosomal protein S13
- Chain AP
- 30S ribosomal protein S14 type Z
- Chain AT
- 30S ribosomal protein S19
- Chain H
- Dehydrogenase
Coloring options: