J3_9SRC_003
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GG*CUGAAAAGCAC*GGGUGAAAAGAGCC
- Length
- 27 nucleotides
- Bulged bases
- 9SRC|1|1|G|660
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRC_003 not in the Motif Atlas
- Geometric match to J3_9E6Q_002
- Geometric discrepancy: 0.0841
- The information below is about J3_9E6Q_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.3
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9SRC|1|1|G|144
9SRC|1|1|G|145
*
9SRC|1|1|C|628
9SRC|1|1|U|629
9SRC|1|1|G|630
9SRC|1|1|A|631
9SRC|1|1|A|632
9SRC|1|1|A|633
9SRC|1|1|A|634
9SRC|1|1|G|635
9SRC|1|1|C|636
9SRC|1|1|A|637
9SRC|1|1|C|638
*
9SRC|1|1|G|649
9SRC|1|1|G|650
9SRC|1|1|G|651
9SRC|1|1|U|652
9SRC|1|1|G|653
9SRC|1|1|A|654
9SRC|1|1|A|655
9SRC|1|1|A|656
9SRC|1|1|A|657
9SRC|1|1|G|658
9SRC|1|1|A|659
9SRC|1|1|G|660
9SRC|1|1|C|661
9SRC|1|1|C|662
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BS
- Large ribosomal subunit protein uL22
- Chain BU
- Large ribosomal subunit protein uL24
- Chain Bf
- Large ribosomal subunit protein eL39
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