J3_9SRC_010

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGGA*UUUAAAGAGUG*CUCACC

Length

21 nucleotides

Bulged bases

9SRC|1|1|G|1311, 9SRC|1|1|A|1343

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRC|1|1|G|1309
9SRC|1|1|G|1310
9SRC|1|1|G|1311
9SRC|1|1|A|1312
*
9SRC|1|1|U|1336
9SRC|1|1|U|1337
9SRC|1|1|U|1338
9SRC|1|1|A|1339
9SRC|1|1|A|1340
9SRC|1|1|A|1341
9SRC|1|1|G|1342
9SRC|1|1|A|1343
9SRC|1|1|G|1344
9SRC|1|1|U|1345
9SRC|1|1|G|1346
*
9SRC|1|1|C|1355
9SRC|1|1|U|1356
9SRC|1|1|C|1357
9SRC|1|1|A|1358
9SRC|1|1|C|1359
9SRC|1|1|C|1360

Current chains

Chain 1

rRNA 23S

Nearby chains