J3_9SRC_026

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAAG*CUAGUACC*GCGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRC|1|2|C|908
9SRC|1|2|A|909
9SRC|1|2|A|910
9SRC|1|2|G|911
*
9SRC|1|2|C|1318
9SRC|1|2|U|1319
9SRC|1|2|A|1320
9SRC|1|2|G|1321
9SRC|1|2|U|1322
9SRC|1|2|A|1323
9SRC|1|2|C|1324
9SRC|1|2|C|1325
*
9SRC|1|2|G|1345
9SRC|1|2|C|1346
9SRC|1|2|G|1347
9SRC|1|2|A|1348
9SRC|1|2|A|1349
9SRC|1|2|U|1350
9SRC|1|2|A|1351
9SRC|1|2|C|1352
9SRC|1|2|G|1353

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AH

30S ribosomal protein S7

Chain AK

30S ribosomal protein S9

Chain AX

30S ribosomal protein S28e