J3_9SRC_028

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUUAAUU(OMG)*CGGGAACCUCAC*GGCUA

Length

25 nucleotides

Bulged bases

9SRC|1|2|G|946, 9SRC|1|2|G|948, 9SRC|1|2|A|950

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRC|1|2|U|927
9SRC|1|2|U|928
9SRC|1|2|U|929
9SRC|1|2|A|930
9SRC|1|2|A|931
9SRC|1|2|U|932
9SRC|1|2|U|933
9SRC|1|2|OMG|934
*
9SRC|1|2|C|945
9SRC|1|2|G|946
9SRC|1|2|G|947
9SRC|1|2|G|948
9SRC|1|2|A|949
9SRC|1|2|A|950
9SRC|1|2|C|951
9SRC|1|2|C|952
9SRC|1|2|U|953
9SRC|1|2|C|954
9SRC|1|2|A|955
9SRC|1|2|C|956
*
9SRC|1|2|G|1195
9SRC|1|2|G|1196
9SRC|1|2|C|1197
9SRC|1|2|U|1198
9SRC|1|2|A|1199

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AL

30S ribosomal protein S10

Chain AO

30S ribosomal protein S13

Chain AP

30S ribosomal protein S14 type Z

Chain AT

30S ribosomal protein S19

Chain H

Dehydrogenase