J3_9SRC_029

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCGAC*GAGAG*(4AC)GAAAC

Length

16 nucleotides

Bulged bases

9SRC|1|2|A|1188

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRC|1|2|G|962
9SRC|1|2|C|963
9SRC|1|2|G|964
9SRC|1|2|A|965
9SRC|1|2|C|966
*
9SRC|1|2|G|1008
9SRC|1|2|A|1009
9SRC|1|2|G|1010
9SRC|1|2|A|1011
9SRC|1|2|G|1012
*
9SRC|1|2|4AC|1184
9SRC|1|2|G|1185
9SRC|1|2|A|1186
9SRC|1|2|A|1187
9SRC|1|2|A|1188
9SRC|1|2|C|1189

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AP

30S ribosomal protein S14 type Z