J3_9SRC_031

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UA(OMC)*GCGUC*GUAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRC|1|2|U|1038
9SRC|1|2|A|1039
9SRC|1|2|OMC|1040
*
9SRC|1|2|G|1047
9SRC|1|2|C|1048
9SRC|1|2|G|1049
9SRC|1|2|U|1050
9SRC|1|2|C|1051
*
9SRC|1|2|G|1064
9SRC|1|2|U|1065
9SRC|1|2|A|1066
9SRC|1|2|A|1067

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AF

30S ribosomal protein S5