J3_9SRD_006

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUA*UGAGUAC*GGAAGC

Length

16 nucleotides

Bulged bases

9SRD|1|1|U|417, 9SRD|1|1|G|527

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|1|G|416
9SRD|1|1|U|417
9SRD|1|1|A|418
*
9SRD|1|1|U|526
9SRD|1|1|G|527
9SRD|1|1|A|528
9SRD|1|1|G|529
9SRD|1|1|U|530
9SRD|1|1|A|531
9SRD|1|1|C|532
*
9SRD|1|1|G|553
9SRD|1|1|G|554
9SRD|1|1|A|555
9SRD|1|1|A|556
9SRD|1|1|G|557
9SRD|1|1|C|558

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BM

Large ribosomal subunit protein eL15

Chain Bk

C2H2-type domain-containing protein