J3_9SRD_010
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CUUAGACAGCGGGGA*UUUAAAGAGUG*CUCACCCGUCGAG
- Length
- 39 nucleotides
- Bulged bases
- 9SRD|1|1|U|1300, 9SRD|1|1|G|1308, 9SRD|1|1|A|1343, 9SRD|1|1|G|1362, 9SRD|1|1|U|1363
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRD|1|1|C|1298
9SRD|1|1|U|1299
9SRD|1|1|U|1300
9SRD|1|1|A|1301
9SRD|1|1|G|1302
9SRD|1|1|A|1303
9SRD|1|1|C|1304
9SRD|1|1|A|1305
9SRD|1|1|G|1306
9SRD|1|1|C|1307
9SRD|1|1|G|1308
9SRD|1|1|G|1309
9SRD|1|1|G|1310
9SRD|1|1|G|1311
9SRD|1|1|A|1312
*
9SRD|1|1|U|1336
9SRD|1|1|U|1337
9SRD|1|1|U|1338
9SRD|1|1|A|1339
9SRD|1|1|A|1340
9SRD|1|1|A|1341
9SRD|1|1|G|1342
9SRD|1|1|A|1343
9SRD|1|1|G|1344
9SRD|1|1|U|1345
9SRD|1|1|G|1346
*
9SRD|1|1|C|1355
9SRD|1|1|U|1356
9SRD|1|1|C|1357
9SRD|1|1|A|1358
9SRD|1|1|C|1359
9SRD|1|1|C|1360
9SRD|1|1|C|1361
9SRD|1|1|G|1362
9SRD|1|1|U|1363
9SRD|1|1|C|1364
9SRD|1|1|G|1365
9SRD|1|1|A|1366
9SRD|1|1|G|1367
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BF
- Large ribosomal subunit protein uL6
- Chain Bl
- Large ribosomal subunit protein eL20
Coloring options: