J3_9SRD_012

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCCAG*(4AC)GAGAAC*GUGCC

Length

17 nucleotides

Bulged bases

9SRD|1|1|G|1881, 9SRD|1|1|A|1882

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|1|G|1564
9SRD|1|1|C|1565
9SRD|1|1|C|1566
9SRD|1|1|A|1567
9SRD|1|1|G|1568
*
9SRD|1|1|4AC|1878
9SRD|1|1|G|1879
9SRD|1|1|A|1880
9SRD|1|1|G|1881
9SRD|1|1|A|1882
9SRD|1|1|A|1883
9SRD|1|1|C|1884
*
9SRD|1|1|G|1893
9SRD|1|1|U|1894
9SRD|1|1|G|1895
9SRD|1|1|C|1896
9SRD|1|1|C|1897

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain Bd

Large ribosomal subunit protein eL34

Chain Be

Large ribosomal subunit protein eL37

Chain Bf

Large ribosomal subunit protein eL39