J3_9SRD_014

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGUG*CAAGC*GAAUUCC

Length

16 nucleotides

Bulged bases

9SRD|1|1|U|1857

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|1|G|1677
9SRD|1|1|G|1678
9SRD|1|1|U|1679
9SRD|1|1|G|1680
*
9SRD|1|1|C|1689
9SRD|1|1|A|1690
9SRD|1|1|A|1691
9SRD|1|1|G|1692
9SRD|1|1|C|1693
*
9SRD|1|1|G|1853
9SRD|1|1|A|1854
9SRD|1|1|A|1855
9SRD|1|1|U|1856
9SRD|1|1|U|1857
9SRD|1|1|C|1858
9SRD|1|1|C|1859

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain B5

Large ribosomal subunit protein eL14

Chain Bd

Large ribosomal subunit protein eL34